I'm currently engaged in a machine - learning project where I need to utilize the random forest algorithm. I've installed the randomForest package in R, but I'm facing significant issues when attempting to build the model.

I've prepared a minimal reproducible example to showcase the problem. In my actual project, I read data from my_data.csv. However, for the sake of reproducibility, here is a simple dataset created within R.

# Load the necessary package
library(randomForest)
    
# Create a sample dataset  
set.seed(123)  
data <- data.frame(
  var1 = rnorm(100),  
  var2 = sample(letters[1:3], 100, replace = TRUE),  
  target = sample(0:1, 100, replace = TRUE)  
)
 
# Split the data into features (x) and target (y)  
x <- data[, -ncol(data)]  
y <- data[, ncol(data)]

# Try to build the random forest model
model <- randomForest(x = x, y = y, ntree = 500)  

I am indeed performing classification in this project. I should have been clearer about this in my initial post. The target variable in my real - world data, as well as in the example provided, represents categorical classes (in the example, the target variable has values 0 and 1, which are class labels).

I expect the randomForest function to build a classification - oriented random forest model with 500 trees. The model should take the input features x and use them to predict the categorical target variable y. After successful execution, I should get a trained model object that I can use for predicting the class of new data and to evaluate variable importance for classification purposes.

When I run the above code with my real - world data (from my_data.csv), I encounter an error. However, with the provided example data, using randomForest version 4.7 - 1.2, I receive a warning instead: "The response has five or fewer unique values. Are you sure you want to do regression?" This warning indicates that there might be an issue with how the function is interpreting my data for the task at hand.

I'm currently engaged in a machine - learning project where I need to utilize the random forest algorithm. I've installed the randomForest package in R, but I'm facing significant issues when attempting to build the model.

I've prepared a minimal reproducible example to showcase the problem. In my actual project, I read data from my_data.csv. However, for the sake of reproducibility, here is a simple dataset created within R.

# Load the necessary package
library(randomForest)
    
# Create a sample dataset  
set.seed(123)  
data <- data.frame(
  var1 = rnorm(100),  
  var2 = sample(letters[1:3], 100, replace = TRUE),  
  target = sample(0:1, 100, replace = TRUE)  
)
 
# Split the data into features (x) and target (y)  
x <- data[, -ncol(data)]  
y <- data[, ncol(data)]

# Try to build the random forest model
model <- randomForest(x = x, y = y, ntree = 500)  

I am indeed performing classification in this project. I should have been clearer about this in my initial post. The target variable in my real - world data, as well as in the example provided, represents categorical classes (in the example, the target variable has values 0 and 1, which are class labels).

I expect the randomForest function to build a classification - oriented random forest model with 500 trees. The model should take the input features x and use them to predict the categorical target variable y. After successful execution, I should get a trained model object that I can use for predicting the class of new data and to evaluate variable importance for classification purposes.

When I run the above code with my real - world data (from my_data.csv), I encounter an error. However, with the provided example data, using randomForest version 4.7 - 1.2, I receive a warning instead: "The response has five or fewer unique values. Are you sure you want to do regression?" This warning indicates that there might be an issue with how the function is interpreting my data for the task at hand.

• r
• random-forest

Share Improve this question Follow asked Mar 13 at 0:04 wzjwzj 1111 silver badge11 bronze badge 1

• As noted in Staging Ground ( stackoverflow/staging-ground/79349411 ) , provided example may not accurately represent the original issue, Error in randomForest.default(x = x, y = y, ntree = 500) : # NA/NaN/Inf in foreign function call (arg 1) ( rev that still had that error: stackoverflow/revisions/79349411/3 ) – margusl Commented Mar 13 at 9:42

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1 Answer 1

Sorted by: Reset to default 1

Make the response a factor.

y <- factor(y)
 
model <- randomForest(x = x, y = y, ntree = 500)  
model

giving

Call:
 randomForest(x = x, y = y, ntree = 500) 
               Type of random forest: classification
                     Number of trees: 500
No. of variables tried at each split: 1

        OOB estimate of  error rate: 46%
Confusion matrix:
   0  1 class.error
0 49 11   0.1833333
1 35  5   0.8750000