2024年2月6日发(作者：)

Recombination rate (cM/Mb)

Fine-scale recombination rates (cM/Mb) as estimated from

Phase II HapMap data (release 21) using the methods described

in McVean et al. (2004) and Winckler et al. (2005). See README

in /downloads/recombination/latest/ for details.

Genotyped SNPs

SNPs in dbSNP genotyped by the HapMap Project. For regions

with very high SNP density, this track is turned off and a bar

density graph showing genotyped SNPs/20Kb is shown instead.

dbSNP SNPs

Reference SNP clusters (rs

Entrez genes

mRNA sequences from NCBI's RefSeq resource. Annotations

from the UCSC Genome Browser Database (,

, ). Both RefSeq short

descriptions and longer summaries (for annotated genes) are

searchable, but only short descriptions are displayed alongside

features.

Ensembl genes

mRNA sequences from Ensembl (NCBI Build 35).

Sequence Tagged Sites

Sequence Tagged Sites from NCBI's UniSTS

tions from the UCSC Genome Browser

Database ().

Contigs

NT contigs created during the construction of the genome

assembly. Annotations from the UCSC Genome Browser

Database ().

3-frame translation (forward)

This track shows the position of stop codons at low

magnifications, and the 3-frame translation at high

magnifications. Only the forward strand is shown.

DNA/GC Content

沒有額外的相關信息.

3-frame translation (reverse)

This track shows the position of stop codons at low

magnifications, and the 3-frame translation at high

magnifications. Only the reverse strand is shown.

Reactome pathways

Genes with pathway annotations in

the Reactome knowledgebase (Reactome version 33).

Genomic Variants (Redon et al.)

Copy number polymorphisms identified in HapMap samples via

the 500K EA and WGTP array platforms (Redon et al. 2007).

Color code: green indicates a genomic gain (insertion); red

indicates a loss (deletion); pink indicates both, a gain and a loss

(insertion and deletion); blue indicates an inversion; black

indicates a variant of undefined type. Number in parenthesis

indicates the number of samples bearing the variant. Source of

data: Database of Genomic Variants.

Genomic Variants (Iafrate et al.)

Copy number polymorphisms from BAC microarray analysis

(Iafrate et al. 2004). Color code: green indicates a genomic gain

(insertion); red indicates a loss (deletion); pink indicates both, a

gain and a loss (insertion and deletion); blue indicates an

inversion; black indicates a variant of undefined type. Number in

parenthesis indicates the number of samples bearing the variant.

Source of data: Database of Genomic Variants.

Genomic Variants (Tuzun et al.)

Copy number polymorphisms (Tuzun et al. 2005). Color code:

green indicates a genomic gain (insertion); red indicates a loss

(deletion); pink indicates both, a gain and a loss (insertion and

deletion); blue indicates an inversion; black indicates a variant of

undefined type. Number in parenthesis indicates the number of

samples bearing the variant. Source of data: Database of

Genomic Variants.

Genomic Variants (Mills et al.)

Copy number polymorphisms (Mills et al. 2006). Color code:

green indicates a genomic gain (insertion); red indicates a loss

(deletion); pink indicates both, a gain and a loss (insertion and

deletion); blue indicates an inversion; black indicates a variant of

undefined type. Number in parenthesis indicates the number of

samples bearing the variant. Source of data: Database of

Genomic Variants.

Genomic Variants (Simon-Sanchez et al.)

Copy number polymorphisms (Simon-Sanchez et al. 2007).

Color code: green indicates a genomic gain (insertion); red

indicates a loss (deletion); pink indicates both, a gain and a loss

(insertion and deletion); blue indicates an inversion; black

indicates a variant of undefined type. Number in parenthesis

indicates the number of samples bearing the variant. Source of

data: Database of Genomic Variants.

Genomic Variants (Locke et al.)

Copy number polymorphisms (Locke et al. 2006). Color code:

green indicates a genomic gain (insertion); red indicates a loss

(deletion); pink indicates both, a gain and a loss (insertion and

deletion); blue indicates an inversion; black indicates a variant of

undefined type. Number in parenthesis indicates the number of

samples bearing the variant. Source of data: Database of

Genomic Variants.

Genomic Variants (Sebat et al.)

Copy number polymorphisms (Sebat et al. 2004). Color code:

green indicates a genomic gain (insertion); red indicates a loss

(deletion); pink indicates both, a gain and a loss (insertion and

deletion); blue indicates an inversion; black indicates a variant of

undefined type. Number in parenthesis indicates the number of

samples bearing the variant. Source of data: Database of

Genomic Variants.

Genomic Variants (Wong et al.)

Copy number polymorphisms (Wong et al. 2007). Color code:

green indicates a genomic gain (insertion); red indicates a loss

(deletion); pink indicates both, a gain and a loss (insertion and

deletion); blue indicates an inversion; black indicates a variant of

undefined type. Number in parenthesis indicates the number of

samples bearing the variant. Source of data: Database of

Genomic Variants.

Genomic Variants (Sharp et al.)

Copy number polymorphisms (Sharp et al. 2005). Color code:

green indicates a genomic gain (insertion); red indicates a loss

(deletion); pink indicates both, a gain and a loss (insertion and

deletion); blue indicates an inversion; black indicates a variant of

undefined type. Number in parenthesis indicates the number of

samples bearing the variant. Source of data: Database of

Genomic Variants.

Deletions (McCarroll et al.)

Deletions from Analysis of HapMap genotyping data (McCarroll

et al. 2006). Number in parenthesis indicates the number of

samples bearing the variant. Source of data: Database of

Genomic Variants.

Deletions (Conrad et al.)

Deletions from Analysis of HapMap genotyping data (Conrad et

al. 2005). Number in parenthesis indicates the number of

samples bearing the variant. Source of data: Database of

Genomic Variants.

Deletions (Hinds et al.)

Deletions from from haploid hybridization analysis (Hinds et al.

2005). Number in parenthesis indicates the number of samples

bearing the variant. Source of data: Database of Genomic

Variants.

Genome-Wide Association studies (NHGRI Catalog)

Genetic variants reported to confer risk or susceptibility to a trait

or disease. Data taken from the NHGRI's Catalog of Published

Genome-Wide Association Studies. Visualize data in

the GWAs karyogram.

OMIM disease associations

The OMIM_asssociations track from the MutaGeneSys

database links SNP data from HapMap and Whole Genome

Association Studies (WGAS) to the known disease variants

reported by the Online Mendelian Inheritance in Man (OMIM).

The track includes two classes of features mapped to the

HapMap Genome Browser: 1). Direct association: the feature is

a HapMap SNP that appears in OMIM, and 2). Indirect

association: the feature is a SNP on a WGAS array that

participates in the best predictor of an OMIM disease variant.

Please see the MutaGeneSys project page for a complete

description.